HL_9JSR_011

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9JSR|1|A|A|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JSR_011 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.5825

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9JSR|1|A|G|410
9JSR|1|A|G|411
9JSR|1|A|A|412
9JSR|1|A|C|413
9JSR|1|A|C|414
9JSR|1|A|A|415
9JSR|1|A|U|416
9JSR|1|A|C|417

Current chains

Chain A

23S Ribosomal RNA

Nearby chains