HL_9JSR_034

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9JSR|1|A|G|2751, 9JSR|1|A|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9JSR_034 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.3107

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9JSR|1|A|C|2745
9JSR|1|A|U|2746
9JSR|1|A|G|2747
9JSR|1|A|A|2748
9JSR|1|A|A|2749
9JSR|1|A|A|2750
9JSR|1|A|G|2751
9JSR|1|A|C|2752
9JSR|1|A|A|2753
9JSR|1|A|U|2754
9JSR|1|A|C|2755
9JSR|1|A|U|2756
9JSR|1|A|A|2757
9JSR|1|A|A|2758
9JSR|1|A|G|2759

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13