HL_9K0Z_001

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

9K0Z|1|2|C|17, 9K0Z|1|2|G|18, 9K0Z|1|2|G|19, 9K0Z|1|2|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_001 not in the Motif Atlas

Geometric match to HL_3EPH_001

Geometric discrepancy: 0.184

The information below is about HL_3EPH_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_45175.1

Basepair signature

cWW-cWS-F-F

Number of instances in this motif group

5

Unit IDs

9K0Z|1|2|C|13
9K0Z|1|2|A|14
9K0Z|1|2|G|15
9K0Z|1|2|U|16
9K0Z|1|2|C|17
9K0Z|1|2|G|18
9K0Z|1|2|G|19
9K0Z|1|2|U|20
9K0Z|1|2|A|21
9K0Z|1|2|G|22

Current chains

Chain 2

P/P-site Phe-tRNA(Phe)

Nearby chains

Chain h

Large subunit ribosomal RNA; LSU rRNA

Chain l

Large ribosomal subunit protein uL5