HL_9K0Z_002
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GACUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9K0Z_002 not in the Motif Atlas
- Geometric match to HL_5IB8_208
- Geometric discrepancy: 0.2973
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9K0Z|1|2|G|30
9K0Z|1|2|A|31
9K0Z|1|2|C|32
9K0Z|1|2|U|33
9K0Z|1|2|C|34
9K0Z|1|2|A|35
9K0Z|1|2|U|36
9K0Z|1|2|A|37
9K0Z|1|2|A|38
9K0Z|1|2|C|39
9K0Z|1|2|C|40
Current chains
- Chain 2
- P/P-site Phe-tRNA(Phe)
Nearby chains
- Chain 4
- mRNA fragment
- Chain 7
- Translation elongation factor EF-G
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- Small ribosomal subunit protein uS9
- Chain M
- Small ribosomal subunit protein uS13
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