HL_9K0Z_004
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 9K0Z|1|A|U|18
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9K0Z_004 not in the Motif Atlas
- Geometric match to HL_4LFB_001
- Geometric discrepancy: 0.0786
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31940.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9K0Z|1|A|U|16
9K0Z|1|A|U|17
9K0Z|1|A|U|18
9K0Z|1|A|G|19
9K0Z|1|A|A|20
9K0Z|1|A|U|21
9K0Z|1|A|C|22
9K0Z|1|A|C|23
9K0Z|1|A|U|24
9K0Z|1|A|G|25
9K0Z|1|A|G|26
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain E
- Small ribosomal subunit protein uS5
- Chain L
- Small ribosomal subunit protein uS12
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