HL_9K0Z_009

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUGAUGGC

Length

9 nucleotides

Bulged bases

9K0Z|1|A|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_009 not in the Motif Atlas

Geometric match to HL_4LFB_006

Geometric discrepancy: 0.1177

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9K0Z|1|A|G|259
9K0Z|1|A|G|260
9K0Z|1|A|U|261
9K0Z|1|A|G|262
9K0Z|1|A|A|263
9K0Z|1|A|U|264
9K0Z|1|A|G|265
9K0Z|1|A|G|266
9K0Z|1|A|C|267

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS17

Chain T

Small ribosomal subunit protein bS20