HL_9K0Z_018
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGGUGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9K0Z_018 not in the Motif Atlas
- Geometric match to HL_4LFB_015
- Geometric discrepancy: 0.0698
- The information below is about HL_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9K0Z|1|A|C|669
9K0Z|1|A|G|670
9K0Z|1|A|G|671
9K0Z|1|A|U|672
9K0Z|1|A|G|673
9K0Z|1|A|G|674
9K0Z|1|A|A|675
9K0Z|1|A|A|676
9K0Z|1|A|U|677
9K0Z|1|A|G|678
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 4
- mRNA fragment
- Chain G
- Small ribosomal subunit protein uS7
- Chain K
- Small ribosomal subunit protein uS11
- Chain h
- Large subunit ribosomal RNA; LSU rRNA
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