HL_9K0Z_027

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9K0Z|1|A|G|1074

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_027 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1033

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

9K0Z|1|A|G|1069
9K0Z|1|A|U|1070
9K0Z|1|A|U|1071
9K0Z|1|A|A|1072
9K0Z|1|A|A|1073
9K0Z|1|A|G|1074
9K0Z|1|A|U|1075
9K0Z|1|A|C|1076

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain V

Small ribosomal subunit protein uS2