HL_9K0Z_048

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

9K0Z|1|h|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_048 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.1384

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

9K0Z|1|h|U|387
9K0Z|1|h|U|388
9K0Z|1|h|G|389
9K0Z|1|h|G|390
9K0Z|1|h|G|391
9K0Z|1|h|A|392
9K0Z|1|h|U|393
9K0Z|1|h|G|394

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24