HL_9K0Z_050

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

9K0Z|1|h|G|411, 9K0Z|1|h|A|412, 9K0Z|1|h|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_050 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1133

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9K0Z|1|h|G|409
9K0Z|1|h|U|410
9K0Z|1|h|G|411
9K0Z|1|h|A|412
9K0Z|1|h|G|413
9K0Z|1|h|A|414
9K0Z|1|h|G|415
9K0Z|1|h|C|416
9K0Z|1|h|C|417

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24

Chain k

Large ribosomal subunit protein uL4