HL_9K0Z_056

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUUGAAGAA

Length

10 nucleotides

Bulged bases

9K0Z|1|h|A|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_056 not in the Motif Atlas

Geometric match to HL_9DFE_016

Geometric discrepancy: 0.1396

The information below is about HL_9DFE_016

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

9K0Z|1|h|U|658
9K0Z|1|h|U|659
9K0Z|1|h|U|660
9K0Z|1|h|U|661
9K0Z|1|h|G|662
9K0Z|1|h|A|663
9K0Z|1|h|A|664
9K0Z|1|h|G|665
9K0Z|1|h|A|666
9K0Z|1|h|A|667

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain b

Large ribosomal subunit protein bL32

Chain j

Large ribosomal subunit protein uL3

Chain s

Large ribosomal subunit protein uL15

Chain x

Large ribosomal subunit protein bL20

Chain y

Large ribosomal subunit protein bL21