HL_9K0Z_068

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9K0Z|1|h|A|1188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_068 not in the Motif Atlas

Geometric match to HL_1MMS_001

Geometric discrepancy: 0.338

The information below is about HL_1MMS_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9K0Z|1|h|C|1182
9K0Z|1|h|U|1183
9K0Z|1|h|U|1184
9K0Z|1|h|A|1185
9K0Z|1|h|G|1186
9K0Z|1|h|A|1187
9K0Z|1|h|A|1188
9K0Z|1|h|G|1189
9K0Z|1|h|C|1190
9K0Z|1|h|A|1191
9K0Z|1|h|G|1192

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 7

Translation elongation factor EF-G

Chain p

Large ribosomal subunit protein uL11