HL_9K0Z_085

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUACUAAAAA

Length

11 nucleotides

Bulged bases

9K0Z|1|h|A|1997, 9K0Z|1|h|C|1998, 9K0Z|1|h|U|1999, 9K0Z|1|h|A|2003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_085 not in the Motif Atlas

Geometric match to HL_5J7L_178

Geometric discrepancy: 0.0985

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

9K0Z|1|h|U|1994
9K0Z|1|h|U|1995
9K0Z|1|h|U|1996
9K0Z|1|h|A|1997
9K0Z|1|h|C|1998
9K0Z|1|h|U|1999
9K0Z|1|h|A|2000
9K0Z|1|h|A|2001
9K0Z|1|h|A|2002
9K0Z|1|h|A|2003
9K0Z|1|h|A|2004

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain d

Large ribosomal subunit protein bL34

Chain i

Large ribosomal subunit protein uL2