HL_9K0Z_088

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

9K0Z|1|h|A|2137

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_088 not in the Motif Atlas

Geometric match to HL_9DFE_046

Geometric discrepancy: 0.1399

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9K0Z|1|h|G|2134
9K0Z|1|h|U|2135
9K0Z|1|h|A|2136
9K0Z|1|h|A|2137
9K0Z|1|h|C|2138
9K0Z|1|h|U|2139
9K0Z|1|h|A|2140
9K0Z|1|h|U|2141
9K0Z|1|h|A|2142
9K0Z|1|h|A|2143
9K0Z|1|h|C|2144

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain 7

Translation elongation factor EF-G

Chain A

Small subunit ribosomal RNA; SSU rRNA