HL_9K0Z_089

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9K0Z|1|h|U|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_089 not in the Motif Atlas

Geometric match to HL_5J7L_182

Geometric discrepancy: 0.0828

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9K0Z|1|h|G|2173
9K0Z|1|h|G|2174
9K0Z|1|h|U|2175
9K0Z|1|h|A|2176
9K0Z|1|h|A|2177
9K0Z|1|h|G|2178
9K0Z|1|h|U|2179
9K0Z|1|h|U|2180
9K0Z|1|h|C|2181

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain r

50S ribosomal protein L14