HL_9K0Z_093

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9K0Z|1|h|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_093 not in the Motif Atlas

Geometric match to HL_4WF9_049

Geometric discrepancy: 0.0836

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9K0Z|1|h|C|2472
9K0Z|1|h|U|2473
9K0Z|1|h|G|2474
9K0Z|1|h|G|2475
9K0Z|1|h|G|2476
9K0Z|1|h|G|2477
9K0Z|1|h|C|2478
9K0Z|1|h|G|2479
9K0Z|1|h|G|2480

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 2

Transfer RNA; tRNA

Chain X

Large ribosomal subunit protein bL27

Chain t

Large ribosomal subunit protein uL16