HL_9K0Z_094

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUAAAAUGUAACG

Length

13 nucleotides

Bulged bases

9K0Z|1|h|A|2492, 9K0Z|1|h|C|2499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_094 not in the Motif Atlas

Geometric match to HL_5J7L_187

Geometric discrepancy: 0.0827

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9K0Z|1|h|C|2488
9K0Z|1|h|U|2489
9K0Z|1|h|A|2490
9K0Z|1|h|A|2491
9K0Z|1|h|A|2492
9K0Z|1|h|A|2493
9K0Z|1|h|U|2494
9K0Z|1|h|G|2495
9K0Z|1|h|U|2496
9K0Z|1|h|A|2497
9K0Z|1|h|A|2498
9K0Z|1|h|C|2499
9K0Z|1|h|G|2500

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain X

Large ribosomal subunit protein bL27

Chain t

Large ribosomal subunit protein uL16