HL_9K0Z_095

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GACGGCAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_095 not in the Motif Atlas

Geometric match to HL_5J7L_219

Geometric discrepancy: 0.1626

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9K0Z|1|h|G|2528
9K0Z|1|h|A|2529
9K0Z|1|h|C|2530
9K0Z|1|h|G|2531
9K0Z|1|h|G|2532
9K0Z|1|h|C|2533
9K0Z|1|h|A|2534
9K0Z|1|h|A|2535
9K0Z|1|h|U|2536

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain l

Large ribosomal subunit protein uL5