HL_9K0Z_096
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGUAAGUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9K0Z_096 not in the Motif Atlas
- Geometric match to HL_5J7L_189
- Geometric discrepancy: 0.1285
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
9K0Z|1|h|U|2548
9K0Z|1|h|G|2549
9K0Z|1|h|U|2550
9K0Z|1|h|A|2551
9K0Z|1|h|A|2552
9K0Z|1|h|G|2553
9K0Z|1|h|U|2554
9K0Z|1|h|G|2555
Current chains
- Chain h
- 23S ribosomal RNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain X
- Large ribosomal subunit protein bL27
- Chain l
- Large ribosomal subunit protein uL5
- Chain t
- Large ribosomal subunit protein uL16
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