HL_9K0Z_101

3D structure

PDB id

9K0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 70S ribosome complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UGGAGCAG

Length

8 nucleotides

Bulged bases

9K0Z|1|h|G|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K0Z_101 not in the Motif Atlas

Geometric match to HL_5J7L_194

Geometric discrepancy: 0.0798

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9K0Z|1|h|U|2752
9K0Z|1|h|G|2753
9K0Z|1|h|G|2754
9K0Z|1|h|A|2755
9K0Z|1|h|G|2756
9K0Z|1|h|C|2757
9K0Z|1|h|A|2758
9K0Z|1|h|G|2759

Current chains

Chain h

23S ribosomal RNA

Nearby chains

Chain 7

Translation elongation factor EF-G

Chain f

50S ribosomal protein L36

Chain m

Large ribosomal subunit protein uL6