HL_9K10_011

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

9K10|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_011 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.1281

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9K10|1|A|U|387
9K10|1|A|U|388
9K10|1|A|G|389
9K10|1|A|G|390
9K10|1|A|G|391
9K10|1|A|A|392
9K10|1|A|U|393
9K10|1|A|G|394

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL24