HL_9K10_013

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAGAGCC

Length

9 nucleotides

Bulged bases

9K10|1|A|G|411, 9K10|1|A|A|412, 9K10|1|A|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_013 not in the Motif Atlas

Geometric match to HL_5J7L_144

Geometric discrepancy: 0.1103

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

9K10|1|A|G|409
9K10|1|A|U|410
9K10|1|A|G|411
9K10|1|A|A|412
9K10|1|A|G|413
9K10|1|A|A|414
9K10|1|A|G|415
9K10|1|A|C|416
9K10|1|A|C|417

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain V

Large ribosomal subunit protein uL24