HL_9K10_061

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAGUGGAAG

Length

10 nucleotides

Bulged bases

9K10|1|A|A|2630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_061 not in the Motif Atlas

Geometric match to HL_5J7L_192

Geometric discrepancy: 0.075

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9K10|1|A|U|2628
9K10|1|A|G|2629
9K10|1|A|A|2630
9K10|1|A|G|2631
9K10|1|A|U|2632
9K10|1|A|G|2633
9K10|1|A|G|2634
9K10|1|A|A|2635
9K10|1|A|A|2636
9K10|1|A|G|2637

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15