HL_9K10_068

3D structure

PDB id

9K10 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EF-G2 bound 50S ribosome subunit complex of M. smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9K10|1|A|G|2975, 9K10|1|A|C|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K10_068 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.1142

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9K10|1|A|C|2969
9K10|1|A|U|2970
9K10|1|A|G|2971
9K10|1|A|A|2972
9K10|1|A|A|2973
9K10|1|A|A|2974
9K10|1|A|G|2975
9K10|1|A|C|2976
9K10|1|A|A|2977
9K10|1|A|U|2978
9K10|1|A|C|2979
9K10|1|A|U|2980
9K10|1|A|A|2981
9K10|1|A|A|2982
9K10|1|A|G|2983

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13

Chain f

50S ribosomal protein L36