HL_9K30_001

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

AGUAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K30_001 not in the Motif Atlas

Geometric match to HL_8B0X_096

Geometric discrepancy: 0.1002

The information below is about HL_8B0X_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9K30|1|B|A|179
9K30|1|B|G|180
9K30|1|B|U|181
9K30|1|B|A|182
9K30|1|B|A|183
9K30|1|B|U|184

Current chains

Chain B

Omega RNA

Nearby chains