9K30 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9K30_001 | 1/B/179:184 | No text annotation | geometric HL_8B0X_096 HL_34789.4 | |
| HL_9K30_002 | 1/B/236:247 | No text annotation | ||
| HL_9K30_003 | 1/B/287:291 | Mini UNCG | geometric HL_8P9A_182 HL_90436.3 | |
| HL_9K30_004 | 1/B/308:313 | GNRA | geometric HL_8P9A_170 HL_34789.4 | |
| HL_9K30_005 | 1/B/407:413 | T-loop with 1 bulged base | geometric HL_8P9A_195 HL_67772.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9K30_001 | 1/B/3:5, 1/B/152:154 | No text annotation | geometric IL_8B0X_145 IL_71625.3 | |
| IL_9K30_002 | 1/B/167:170, 1/B/193:199 | Kink-turn from T-box riboswitch | geometric IL_4LCK_006 IL_51265.4 | |
| IL_9K30_003 | 1/B/170:176, 1/B/187:193 | No text annotation | ||
| IL_9K30_004 | 1/B/211:215, 1/B/340:342 | No text annotation | ||
| IL_9K30_005 | 1/B/227:229, 1/B/254:258 | C-loop | geometric IL_4V9F_051 IL_63596.12 | |
| IL_9K30_006 | 1/B/271:275, 1/B/322:325 | No text annotation | ||
| IL_9K30_007 | 1/B/281:284, 1/B/294:296 | No text annotation | geometric IL_8B0X_006 IL_82096.1 | |
| IL_9K30_008 | 1/B/370:371, 1/B/397:399 | Single bulged A | geometric IL_4PHY_002 IL_14190.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9K30_001 | 1/B/163:165, 1/B/201:204, 1/B/349:352 | No text annotation | ||
| J3_9K30_002 | 1/B/217:224, 1/B/261:263, 1/B/333:338 | No text annotation | ||
| J3_9K30_003 | 1/B/275:280, 1/B/297:303, 1/B/318:322 | No text annotation |
Problematic loops
No problematic loops
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