HL_9K30_003

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

CACGG

Length

5 nucleotides

Bulged bases

9K30|1|B|A|288, 9K30|1|B|G|290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K30_003 not in the Motif Atlas

Geometric match to HL_8P9A_182

Geometric discrepancy: 0.1232

The information below is about HL_8P9A_182

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9K30|1|B|C|287
9K30|1|B|A|288
9K30|1|B|C|289
9K30|1|B|G|290
9K30|1|B|G|291

Current chains

Chain B

Omega RNA

Nearby chains