HL_9K30_005

3D structure

PDB id

9K30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the TbaIscB-omega RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.17 Å

Loop

Sequence

UAUUAUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K30_005 not in the Motif Atlas

Geometric match to HL_8P9A_195

Geometric discrepancy: 0.3768

The information below is about HL_8P9A_195

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9K30|1|B|U|407
9K30|1|B|A|408
9K30|1|B|U|409
9K30|1|B|U|410
9K30|1|B|A|411
9K30|1|B|U|412
9K30|1|B|G|413

Current chains

Chain B

Omega RNA

Nearby chains

Chain A

TbaIscB