HL_9K31_004

3D structure

PDB id

9K31 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the YnpsCas9-guide RNA-target DNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K31_004 not in the Motif Atlas

Geometric match to HL_8B0X_021

Geometric discrepancy: 0.0927

The information below is about HL_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9K31|1|B|C|335
9K31|1|B|G|336
9K31|1|B|U|337
9K31|1|B|G|338
9K31|1|B|A|339
9K31|1|B|G|340

Current chains

Chain B

Guide RNA

Nearby chains

Chain A

YnpsCas9