9K31 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9K31_001 | 1/B/176:181 | GNRA | geometric HL_5Y7M_002 HL_34789.4 | |
| HL_9K31_002 | 1/B/225:230 | No text annotation | ||
| HL_9K31_003 | 1/B/249:259 | No text annotation | ||
| HL_9K31_004 | 1/B/335:340 | No text annotation | geometric HL_8B0X_021 HL_34789.4 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9K31_001 | 1/B/10:11, 1/B/117:119 | Single bulged A | geometric IL_7JJU_004 IL_14190.2 | |
| IL_9K31_002 | 1/B/11:12, 1/B/115:117 | Single bulged U | geometric IL_6UFG_004 IL_97561.5 | |
| IL_9K31_003 | 1/B/132:134, 1/B/381:383 | Isolated non-canonical cWW pair | geometric IL_6IA2_004 IL_01003.4 | |
| IL_9K31_004 | 1/B/142:144, 1/B/157:159 | Isolated non-canonical cWW pair | geometric IL_5CCB_001 IL_01003.4 | |
| IL_9K31_005 | 1/B/164:169, 1/B/189:193 | No text annotation | ||
| IL_9K31_006 | 1/B/173:174, 1/B/183:185 | No text annotation | geometric IL_8OI5_104 IL_46637.2 | |
| IL_9K31_007 | 1/B/213:216, 1/B/370:372 | No text annotation | ||
| IL_9K31_008 | 1/B/240:242, 1/B/266:270 | C-loop | geometric IL_8HNT_002 IL_63596.12 | |
| IL_9K31_009 | 1/B/282:289, 1/B/350:353 | No text annotation | ||
| IL_9K31_010 | 1/B/295:297, 1/B/321:325 | Other IL | geometric IL_4PDB_001 IL_70784.1 | |
| IL_9K31_011 | 1/B/300:303, 1/B/317:318 | Minor groove platform | geometric IL_3MXH_005 IL_87975.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9K31_001 | 1/B/134:136, 1/B/204:207, 1/B/378:381 | No text annotation | ||
| J3_9K31_002 | 1/B/138:141, 1/B/160:161, 1/B/196:202 | No text annotation | ||
| J3_9K31_003 | 1/B/282:295, 1/B/325:330, 1/B/345:353 | No text annotation | ||
| J3_9K31_004 | 1/B/282:297, 1/B/321:330, 1/B/345:353 | No text annotation | ||
| J3_9K31_005 | 1/B/289:295, 1/B/325:330, 1/B/345:350 | No text annotation | ||
| J4_9K31_001 | 1/B/220:222, 1/B/233:238, 1/B/272:275, 1/B/360:366 | No text annotation |
Problematic loops
No problematic loops
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