HL_9K9J_002

3D structure

PDB id

9K9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of linear intron of Anabaena tRNA(Leu) precursor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9K9J_002 not in the Motif Atlas

Geometric match to HL_5FJC_003

Geometric discrepancy: 0.1252

The information below is about HL_5FJC_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9K9J|1|A|A|55
9K9J|1|A|G|56
9K9J|1|A|A|57
9K9J|1|A|A|58
9K9J|1|A|A|59
9K9J|1|A|U|60

Current chains

Chain A

RNA (251-MER)

Nearby chains