9K9J Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9K9J_002 | 1/A/55:60 | GNRA | geometric HL_5FJC_003 HL_34789.5 | |
| HL_9K9J_004 | 1/A/155:160 | No text annotation | ||
| HL_9K9J_006 | 1/A/252:257 | No text annotation | ||
| HL_9K9J_007 | 1/A/265:270 | GNRA | geometric HL_4JF2_001 HL_34789.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9K9J_001 | No text annotation | ||
| HL_9K9J_003 | GNRA | ||
| HL_9K9J_005 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9K9J_001 | 1/A/46:47, 1/A/68:70 | No text annotation | geometric IL_8OI5_012 IL_15011.4 | |
| IL_9K9J_002 | 1/A/89:93, 1/A/115:119 | No text annotation | geometric IL_9H3G_004 IL_87767.3 | |
| IL_9K9J_003 | 1/A/93:99, 1/A/110:115 | No text annotation | ||
| IL_9K9J_004 | 1/A/127:131, 1/A/179:182 | No text annotation | geometric IL_1U6B_004 IL_20358.1 | |
| IL_9K9J_006 | 1/A/140:146, 1/A/169:171 | No text annotation | ||
| IL_9K9J_008 | 1/A/188:190, 1/A/238:239 | Minor groove platform | geometric IL_6DTD_003 IL_34520.4 | |
| IL_9K9J_009 | 1/A/194:204, 1/A/227:234 | Pseudoknot | geometric IL_1U6B_008 IL_43467.1 | |
| IL_9K9J_010 | 1/A/208:212, 1/A/221:223 | No text annotation | geometric IL_2OEU_001 IL_24466.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9K9J_005 | No text annotation | ||
| IL_9K9J_007 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9K9J_001 | 1/A/246:250, 1/A/259:261, 1/A/274:277 | No text annotation |
Problematic loops
No problematic loops
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