HL_9KDU_100
3D structure
- PDB id
- 9KDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GAUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- 9KDU|1|S7|A|59
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KDU_100 not in the Motif Atlas
- Homologous match to HL_6JXM_003
- Geometric discrepancy: 0.582
- The information below is about HL_6JXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9KDU|1|S7|G|53
9KDU|1|S7|A|54
9KDU|1|S7|U|55
9KDU|1|S7|C|56
9KDU|1|S7|G|57
9KDU|1|S7|A|58
9KDU|1|S7|A|59
9KDU|1|S7|A|60
9KDU|1|S7|C|61
Current chains
- Chain S7
- P tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large ribosomal subunit protein uL5
- Chain Lo
- Large ribosomal subunit protein eL42
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