HL_9KDV_014

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUCGUCCGAAAG

Length

12 nucleotides

Bulged bases

9KDV|1|L5|C|1180, 9KDV|1|L5|A|1186

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|C|1178
9KDV|1|L5|U|1179
9KDV|1|L5|C|1180
9KDV|1|L5|G|1181
9KDV|1|L5|U|1182
9KDV|1|L5|C|1183
9KDV|1|L5|C|1184
9KDV|1|L5|G|1185
9KDV|1|L5|A|1186
9KDV|1|L5|A|1187
9KDV|1|L5|A|1188
9KDV|1|L5|G|1189

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LL

Large ribosomal subunit protein eL13

Chain LN

Large ribosomal subunit protein eL15

Chain LY

Large ribosomal subunit protein uL24