9KDV Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9KDV_001 | 1/L5/37:44 | No text annotation | ||
| HL_9KDV_002 | 1/L5/68:73 | No text annotation | ||
| HL_9KDV_003 | 1/L5/89:95 | No text annotation | ||
| HL_9KDV_005 | 1/L5/204:211 | No text annotation | ||
| HL_9KDV_006 | 1/L5/222:226 | No text annotation | ||
| HL_9KDV_007 | 1/L5/230:238 | No text annotation | ||
| HL_9KDV_008 | 1/L5/288:297 | No text annotation | ||
| HL_9KDV_009 | 1/L5/313:322 | No text annotation | ||
| HL_9KDV_010 | 1/L5/367:372 | No text annotation | ||
| HL_9KDV_011 | 1/L5/392:397 | No text annotation | ||
| HL_9KDV_012 | 1/L5/1002:1024 | No text annotation | ||
| HL_9KDV_013 | 1/L5/1132:1141 | No text annotation | ||
| HL_9KDV_014 | 1/L5/1178:1189 | No text annotation | ||
| HL_9KDV_015 | 1/L5/1204:1209 | No text annotation | ||
| HL_9KDV_017 | 1/L5/1250:1262 | No text annotation | ||
| HL_9KDV_019 | 1/L5/1375:1380 | No text annotation | ||
| HL_9KDV_020 | 1/L5/1407:1416 | No text annotation | ||
| HL_9KDV_021 | 1/L5/1441:1449 | No text annotation | ||
| HL_9KDV_022 | 1/L5/1489:1494 | No text annotation | ||
| HL_9KDV_023 | 1/L5/1619:1626 | No text annotation | ||
| HL_9KDV_024 | 1/L5/1667:1673 | No text annotation | ||
| HL_9KDV_025 | 1/L5/1689:1696 | No text annotation | ||
| HL_9KDV_026 | 1/L5/2074:2079 | No text annotation | ||
| HL_9KDV_027 | 1/L5/2133:2141 | No text annotation | ||
| HL_9KDV_028 | 1/L5/2177:2183 | No text annotation | ||
| HL_9KDV_029 | 1/L5/2215:2220 | No text annotation | ||
| HL_9KDV_030 | 1/L5/2226:2228 | No text annotation | ||
| HL_9KDV_031 | 1/L5/2280:2289 | No text annotation | ||
| HL_9KDV_032 | 1/L5/2332:2337 | No text annotation | ||
| HL_9KDV_033 | 1/L5/2378:2386 | No text annotation | ||
| HL_9KDV_034 | 1/L5/2418:2424 | No text annotation | ||
| HL_9KDV_036 | 1/L5/2492:2496 | No text annotation | ||
| HL_9KDV_037 | 1/L5/2546:2553 | No text annotation | ||
| HL_9KDV_038 | 1/L5/2564:2570 | No text annotation | ||
| HL_9KDV_039 | 1/L5/2626:2631 | No text annotation | ||
| HL_9KDV_040 | 1/L5/3271:3275 | No text annotation | ||
| HL_9KDV_041 | 1/L5/3296:3306 | No text annotation | ||
| HL_9KDV_042 | 1/L5/3325:3331 | No text annotation | ||
| HL_9KDV_043 | 1/L5/3381:3386 | No text annotation | ||
| HL_9KDV_044 | 1/L5/3414:3424 | No text annotation | ||
| HL_9KDV_045 | 1/L5/3453:3461 | No text annotation | ||
| HL_9KDV_046 | 1/L5/3530:3539 | No text annotation | ||
| HL_9KDV_047 | 1/L5/3846:3854 | No text annotation | ||
| HL_9KDV_048 | 1/L5/3863:3875 | No text annotation | ||
| HL_9KDV_049 | 1/L5/3903:3911 | No text annotation | ||
| HL_9KDV_050 | 1/L5/3923:3930 | No text annotation | ||
| HL_9KDV_051 | 1/L5/3954:3962 | No text annotation | ||
| HL_9KDV_052 | 1/L5/3974:3979 | No text annotation | ||
| HL_9KDV_053 | 1/L5/4005:4015 | No text annotation | ||
| HL_9KDV_054 | 1/L5/4070:4078 | No text annotation | ||
| HL_9KDV_055 | 1/L5/4127:4134 | No text annotation | ||
| HL_9KDV_056 | 1/L5/4148:4158 | No text annotation | ||
| HL_9KDV_057 | 1/L5/4193:4198 | No text annotation | ||
| HL_9KDV_058 | 1/L5/4256:4261 | No text annotation | ||
| HL_9KDV_059 | 1/L5/4299:4304 | No text annotation | ||
| HL_9KDV_060 | 1/L5/4341:4355 | No text annotation | ||
| HL_9KDV_061 | 1/L5/4553:4560 | No text annotation | ||
| HL_9KDV_062 | 1/L5/4623:4631 | No text annotation | ||
| HL_9KDV_063 | 1/L7/32:45 | No text annotation | geometric HL_8QYX_071 HL_01182.2 | |
| HL_9KDV_064 | 1/L7/36:41 | No text annotation | homologous HL_7A0S_069 HL_59381.4 | |
| HL_9KDV_065 | 1/L7/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.6 | |
| HL_9KDV_066 | 1/L8/47:56 | No text annotation | ||
| HL_9KDV_067 | 1/L8/107:112 | No text annotation | ||
| HL_9KDV_069 | 1/S2/7:17 | No text annotation | ||
| HL_9KDV_070 | 1/S2/145:174 | No text annotation | ||
| HL_9KDV_071 | 1/S2/289:296 | No text annotation | ||
| HL_9KDV_072 | 1/S2/378:388 | No text annotation | ||
| HL_9KDV_073 | 1/S2/417:422 | No text annotation | ||
| HL_9KDV_074 | 1/S2/442:453 | No text annotation | ||
| HL_9KDV_075 | 1/S2/463:468 | No text annotation | ||
| HL_9KDV_078 | 1/S2/570:582 | No text annotation | ||
| HL_9KDV_079 | 1/S2/619:624 | No text annotation | ||
| HL_9KDV_080 | 1/S2/821:829 | No text annotation | ||
| HL_9KDV_082 | 1/S2/878:910 | No text annotation | ||
| HL_9KDV_083 | 1/S2/958:967 | No text annotation | ||
| HL_9KDV_084 | 1/S2/995:1000 | No text annotation | ||
| HL_9KDV_085 | 1/S2/1055:1065 | No text annotation | ||
| HL_9KDV_086 | 1/S2/1114:1121 | No text annotation | ||
| HL_9KDV_087 | 1/S2/1142:1147 | No text annotation | ||
| HL_9KDV_088 | 1/S2/1179:1184 | No text annotation | ||
| HL_9KDV_089 | 1/S2/1246:1255 | No text annotation | ||
| HL_9KDV_090 | 1/S2/1295:1306 | No text annotation | ||
| HL_9KDV_091 | 1/S2/1354:1359 | No text annotation | ||
| HL_9KDV_092 | 1/S2/1367:1374 | No text annotation | ||
| HL_9KDV_094 | 1/S2/1461:1467 | No text annotation | ||
| HL_9KDV_095 | 1/S2/1566:1571 | No text annotation | ||
| HL_9KDV_096 | 1/S2/1615:1626 | No text annotation | ||
| HL_9KDV_097 | 1/S2/1659:1667 | No text annotation | ||
| HL_9KDV_098 | 1/S2/1848:1853 | No text annotation | ||
| HL_9KDV_100 | 1/S6/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_81376.4 | |
| HL_9KDV_103 | 1/S7/30:40 | No text annotation | homologous HL_5IB8_208 HL_14063.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9KDV_004 | No text annotation | ||
| HL_9KDV_016 | No text annotation | ||
| HL_9KDV_018 | No text annotation | ||
| HL_9KDV_035 | No text annotation | ||
| HL_9KDV_068 | No text annotation | ||
| HL_9KDV_076 | No text annotation | ||
| HL_9KDV_077 | No text annotation | ||
| HL_9KDV_081 | No text annotation | ||
| HL_9KDV_093 | No text annotation | ||
| HL_9KDV_099 | tRNA D-loop | ||
| HL_9KDV_101 | No text annotation | ||
| HL_9KDV_102 | tRNA D-loop | ||
| HL_9KDV_104 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9KDV_001 | 1/L5/6:7, 1/L8/149:151 | No text annotation | ||
| IL_9KDV_002 | 1/L5/12:14, 1/L8/143:144 | No text annotation | ||
| IL_9KDV_003 | 1/L5/16:18, 1/L8/139:141 | No text annotation | ||
| IL_9KDV_004 | 1/L5/26:27, 1/L5/55:57 | No text annotation | ||
| IL_9KDV_005 | 1/L5/30:37, 1/L5/44:52 | No text annotation | ||
| IL_9KDV_006 | 1/L5/81:88, 1/L5/96:102 | No text annotation | ||
| IL_9KDV_007 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_9KDV_008 | 1/L5/125:126, 1/L5/142:144 | No text annotation | ||
| IL_9KDV_011 | 1/L5/195:196, 1/L5/244:246 | No text annotation | ||
| IL_9KDV_012 | 1/L5/199:201, 1/L5/214:215 | No text annotation | ||
| IL_9KDV_013 | 1/L5/338:341, 1/L8/32:33 | No text annotation | ||
| IL_9KDV_014 | 1/L5/347:349, 1/L8/25:26 | No text annotation | ||
| IL_9KDV_015 | 1/L5/386:389, 1/L5/400:413 | No text annotation | ||
| IL_9KDV_016 | 1/L5/414:420, 1/L8/13:19 | No text annotation | ||
| IL_9KDV_017 | 1/L5/424:426, 1/L8/7:9 | No text annotation | ||
| IL_9KDV_018 | 1/L5/442:445, 1/L5/1115:1119 | No text annotation | ||
| IL_9KDV_019 | 1/L5/447:449, 1/L5/1112:1113 | No text annotation | ||
| IL_9KDV_020 | 1/L5/458:459, 1/L5/703:705 | No text annotation | ||
| IL_9KDV_021 | 1/L5/461:463, 1/L5/699:701 | No text annotation | ||
| IL_9KDV_022 | 1/L5/465:471, 1/L5/690:697 | No text annotation | ||
| IL_9KDV_025 | 1/L5/511:513, 1/L5/657:658 | No text annotation | ||
| IL_9KDV_026 | 1/L5/717:718, 1/L5/1101:1103 | No text annotation | ||
| IL_9KDV_027 | 1/L5/731:732, 1/L5/840:843 | No text annotation | ||
| IL_9KDV_028 | 1/L5/735:739, 1/L5/836:837 | No text annotation | ||
| IL_9KDV_029 | 1/L5/740:742, 1/L5/828:835 | No text annotation | ||
| IL_9KDV_030 | 1/L5/745:747, 1/L5/824:825 | No text annotation | ||
| IL_9KDV_031 | 1/L5/748:751, 1/L5/821:823 | No text annotation | ||
| IL_9KDV_032 | 1/L5/753:760, 1/L5/811:819 | No text annotation | ||
| IL_9KDV_033 | 1/L5/929:930, 1/L5/1067:1069 | No text annotation | ||
| IL_9KDV_034 | 1/L5/938:940, 1/L5/1047:1051 | No text annotation | ||
| IL_9KDV_035 | 1/L5/942:943, 1/L5/1043:1045 | No text annotation | ||
| IL_9KDV_038 | 1/L5/1172:1175, 1/L5/1194:1197 | No text annotation | ||
| IL_9KDV_039 | 1/L5/1175:1176, 1/L5/1191:1194 | No text annotation | ||
| IL_9KDV_040 | 1/L5/1239:1243, 1/L5/1269:1274 | No text annotation | ||
| IL_9KDV_041 | 1/L5/1245:1248, 1/L5/1264:1267 | No text annotation | ||
| IL_9KDV_042 | 1/L5/1281:1282, 1/L5/1310:1312 | No text annotation | ||
| IL_9KDV_043 | 1/L5/1288:1290, 1/L5/1303:1304 | No text annotation | ||
| IL_9KDV_044 | 1/L5/1293:1294, 1/L5/1298:1300 | No text annotation | ||
| IL_9KDV_045 | 1/L5/1334:1336, 1/L5/1469:1471 | No text annotation | ||
| IL_9KDV_046 | 1/L5/1336:1340, 1/L5/1462:1469 | No text annotation | ||
| IL_9KDV_047 | 1/L5/1359:1360, 1/L5/1426:1428 | No text annotation | ||
| IL_9KDV_048 | 1/L5/1364:1365, 1/L5/1390:1392 | No text annotation | ||
| IL_9KDV_049 | 1/L5/1365:1369, 1/L5/1386:1390 | No text annotation | ||
| IL_9KDV_050 | 1/L5/1400:1403, 1/L5/1419:1421 | No text annotation | ||
| IL_9KDV_051 | 1/L5/1404:1406, 1/L5/1417:1418 | No text annotation | ||
| IL_9KDV_052 | 1/L5/1438:1440, 1/L5/1450:1454 | No text annotation | ||
| IL_9KDV_053 | 1/L5/1485:1487, 1/L5/1496:1498 | No text annotation | ||
| IL_9KDV_054 | 1/L5/1500:1502, 1/L5/1651:1654 | No text annotation | ||
| IL_9KDV_055 | 1/L5/1526:1528, 1/L5/1641:1642 | No text annotation | ||
| IL_9KDV_056 | 1/L5/1535:1540, 1/L5/1595:1600 | No text annotation | ||
| IL_9KDV_057 | 1/L5/1540:1541, 1/L5/1593:1595 | No text annotation | ||
| IL_9KDV_058 | 1/L5/1542:1547, 1/L5/1589:1592 | No text annotation | ||
| IL_9KDV_059 | 1/L5/1549:1552, 1/L5/1584:1587 | No text annotation | ||
| IL_9KDV_060 | 1/L5/1552:1554, 1/L5/1582:1584 | No text annotation | ||
| IL_9KDV_061 | 1/L5/1617:1619, 1/L5/1626:1627 | No text annotation | ||
| IL_9KDV_062 | 1/L5/1661:1663, 1/L5/1677:1679 | No text annotation | ||
| IL_9KDV_064 | 1/L5/1708:1712, 1/L5/1870:1874 | No text annotation | ||
| IL_9KDV_065 | 1/L5/1714:1721, 1/L5/1867:1868 | No text annotation | ||
| IL_9KDV_066 | 1/L5/1721:1723, 1/L5/1866:1867 | No text annotation | ||
| IL_9KDV_067 | 1/L5/1723:1725, 1/L5/1865:1866 | No text annotation | ||
| IL_9KDV_068 | 1/L5/1729:1736, 1/L5/1856:1861 | No text annotation | ||
| IL_9KDV_069 | 1/L5/1736:1747, 1/L5/1841:1856 | No text annotation | ||
| IL_9KDV_070 | 1/L5/1749:1751, 1/L5/1838:1839 | No text annotation | ||
| IL_9KDV_071 | 1/L5/1886:1888, 1/L5/2029:2030 | No text annotation | ||
| IL_9KDV_072 | 1/L5/2047:2049, 1/L5/2099:2102 | No text annotation | ||
| IL_9KDV_073 | 1/L5/2056:2058, 1/L5/2091:2092 | No text annotation | ||
| IL_9KDV_074 | 1/L5/2059:2066, 1/L5/2086:2090 | No text annotation | ||
| IL_9KDV_075 | 1/L5/2069:2071, 1/L5/2082:2083 | No text annotation | ||
| IL_9KDV_076 | 1/L5/2115:2121, 1/L5/3515:3520 | No text annotation | ||
| IL_9KDV_077 | 1/L5/2172:2176, 1/L5/2184:2186 | No text annotation | ||
| IL_9KDV_078 | 1/L5/2203:2207, 1/L5/2266:2271 | No text annotation | ||
| IL_9KDV_079 | 1/L5/2234:2236, 1/L5/2256:2257 | No text annotation | ||
| IL_9KDV_080 | 1/L5/2236:2238, 1/L5/2255:2256 | No text annotation | ||
| IL_9KDV_081 | 1/L5/2299:2304, 1/L5/2526:2528 | No text annotation | ||
| IL_9KDV_082 | 1/L5/2306:2307, 1/L5/2522:2524 | No text annotation | ||
| IL_9KDV_083 | 1/L5/2343:2347, 1/L5/2506:2510 | No text annotation | ||
| IL_9KDV_084 | 1/L5/2367:2368, 1/L5/2478:2480 | No text annotation | ||
| IL_9KDV_085 | 1/L5/2368:2369, 1/L5/2476:2478 | No text annotation | ||
| IL_9KDV_086 | 1/L5/2400:2402, 1/L5/2439:2442 | No text annotation | ||
| IL_9KDV_087 | 1/L5/2405:2407, 1/L5/2435:2436 | No text annotation | ||
| IL_9KDV_088 | 1/L5/2410:2416, 1/L5/2426:2432 | No text annotation | ||
| IL_9KDV_090 | 1/L5/2586:2592, 1/L5/3507:3510 | No text annotation | ||
| IL_9KDV_091 | 1/L5/2598:2600, 1/L5/3499:3501 | No text annotation | ||
| IL_9KDV_092 | 1/L5/2601:2604, 1/L5/3497:3498 | No text annotation | ||
| IL_9KDV_093 | 1/L5/2601:2609, 1/L5/3494:3498 | No text annotation | ||
| IL_9KDV_094 | 1/L5/2604:2609, 1/L5/3494:3497 | No text annotation | ||
| IL_9KDV_095 | 1/L5/2621:2626, 1/L5/2631:2637 | No text annotation | ||
| IL_9KDV_096 | 1/L5/2643:2645, 1/L5/3267:3269 | No text annotation | ||
| IL_9KDV_097 | 1/L5/2650:2651, 1/L5/3259:3262 | No text annotation | ||
| IL_9KDV_099 | 1/L5/3289:3290, 1/L5/3484:3486 | No text annotation | ||
| IL_9KDV_100 | 1/L5/3317:3322, 1/L5/3334:3341 | No text annotation | ||
| IL_9KDV_101 | 1/L5/3357:3360, 1/L5/3406:3407 | No text annotation | ||
| IL_9KDV_102 | 1/L5/3361:3362, 1/L5/3402:3405 | No text annotation | ||
| IL_9KDV_103 | 1/L5/3365:3371, 1/L5/3396:3399 | No text annotation | ||
| IL_9KDV_104 | 1/L5/3372:3378, 1/L5/3389:3395 | No text annotation | ||
| IL_9KDV_105 | 1/L5/3437:3438, 1/L5/3468:3471 | No text annotation | ||
| IL_9KDV_106 | 1/L5/3438:3449, 1/L5/3465:3468 | No text annotation | ||
| IL_9KDV_107 | 1/L5/3552:3555, 1/L5/4216:4218 | No text annotation | ||
| IL_9KDV_108 | 1/L5/3557:3559, 1/L5/4211:4214 | No text annotation | ||
| IL_9KDV_109 | 1/L5/3570:3572, 1/L5/4041:4042 | No text annotation | ||
| IL_9KDV_110 | 1/L5/3573:3574, 1/L5/4037:4040 | No text annotation | ||
| IL_9KDV_111 | 1/L5/3584:3586, 1/L5/3834:3837 | No text annotation | ||
| IL_9KDV_112 | 1/L5/3733:3739, 1/L5/3814:3817 | No text annotation | ||
| IL_9KDV_113 | 1/L5/3844:3845, 1/L5/3855:3857 | No text annotation | ||
| IL_9KDV_114 | 1/L5/3896:3898, 1/L5/3916:3920 | No text annotation | ||
| IL_9KDV_115 | 1/L5/3944:3946, 1/L5/3970:3971 | No text annotation | ||
| IL_9KDV_116 | 1/L5/3948:3951, 1/L5/3965:3968 | No text annotation | ||
| IL_9KDV_117 | 1/L5/4000:4004, 1/L5/4016:4018 | No text annotation | ||
| IL_9KDV_118 | 1/L5/4053:4056, 1/L5/4093:4097 | No text annotation | ||
| IL_9KDV_119 | 1/L5/4056:4058, 1/L5/4092:4093 | No text annotation | ||
| IL_9KDV_120 | 1/L5/4058:4060, 1/L5/4088:4092 | No text annotation | ||
| IL_9KDV_121 | 1/L5/4065:4069, 1/L5/4079:4083 | No text annotation | ||
| IL_9KDV_122 | 1/L5/4106:4107, 1/L5/4179:4181 | No text annotation | ||
| IL_9KDV_123 | 1/L5/4109:4111, 1/L5/4173:4177 | No text annotation | ||
| IL_9KDV_124 | 1/L5/4111:4112, 1/L5/4170:4173 | No text annotation | ||
| IL_9KDV_125 | 1/L5/4119:4121, 1/L5/4142:4144 | No text annotation | ||
| IL_9KDV_126 | 1/L5/4119:4123, 1/L5/4138:4144 | No text annotation | ||
| IL_9KDV_127 | 1/L5/4121:4123, 1/L5/4138:4142 | No text annotation | ||
| IL_9KDV_128 | 1/L5/4190:4191, 1/L5/4200:4202 | No text annotation | ||
| IL_9KDV_129 | 1/L5/4233:4235, 1/L5/4374:4376 | No text annotation | ||
| IL_9KDV_130 | 1/L5/4235:4238, 1/L5/4370:4374 | No text annotation | ||
| IL_9KDV_131 | 1/L5/4243:4245, 1/L5/4271:4273 | No text annotation | ||
| IL_9KDV_132 | 1/L5/4249:4256, 1/L5/4261:4267 | No text annotation | ||
| IL_9KDV_133 | 1/L5/4277:4282, 1/L5/4322:4326 | No text annotation | ||
| IL_9KDV_134 | 1/L5/4285:4290, 1/L5/4315:4319 | No text annotation | ||
| IL_9KDV_135 | 1/L5/4291:4293, 1/L5/4312:4314 | No text annotation | ||
| IL_9KDV_136 | 1/L5/4294:4295, 1/L5/4308:4311 | No text annotation | ||
| IL_9KDV_137 | 1/L5/4333:4338, 1/L5/4358:4363 | No text annotation | ||
| IL_9KDV_139 | 1/L5/4397:4400, 1/L5/4602:4605 | No text annotation | ||
| IL_9KDV_140 | 1/L5/4401:4403, 1/L5/4599:4601 | No text annotation | ||
| IL_9KDV_141 | 1/L5/4403:4405, 1/L5/4596:4599 | No text annotation | ||
| IL_9KDV_142 | 1/L5/4410:4419, 1/L5/4515:4523 | No text annotation | ||
| IL_9KDV_143 | 1/L5/4531:4535, 1/L5/4576:4580 | No text annotation | ||
| IL_9KDV_144 | 1/L5/4537:4542, 1/L5/4570:4574 | No text annotation | ||
| IL_9KDV_146 | 1/L5/4620:4623, 1/L5/4631:4634 | No text annotation | ||
| IL_9KDV_147 | 1/L5/4640:4642, 1/L5/4705:4707 | No text annotation | ||
| IL_9KDV_148 | 1/L5/4644:4645, 1/L5/4701:4703 | No text annotation | ||
| IL_9KDV_149 | 1/L5/4648:4650, 1/L5/4693:4698 | No text annotation | ||
| IL_9KDV_150 | 1/L5/4651:4657, 1/L5/4687:4692 | No text annotation | ||
| IL_9KDV_151 | 1/L5/4660:4662, 1/L5/4683:4684 | No text annotation | ||
| IL_9KDV_152 | 1/L5/4662:4665, 1/L5/4680:4683 | No text annotation | ||
| IL_9KDV_153 | 1/L7/15:16, 1/L7/62:64 | No text annotation | geometric IL_8QYX_165 IL_05642.5 | |
| IL_9KDV_154 | 1/L7/21:27, 1/L7/52:57 | No text annotation | geometric IL_8QYX_166 IL_41504.2 | |
| IL_9KDV_155 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.4 | |
| IL_9KDV_156 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.14 | |
| IL_9KDV_157 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_8QYX_169 IL_62879.1 | |
| IL_9KDV_158 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_01334.1 | |
| IL_9KDV_159 | 1/L7/82:85, 1/L7/92:94 | No text annotation | geometric IL_8QYX_171 IL_01003.6 | |
| IL_9KDV_160 | 1/L8/64:66, 1/L8/92:95 | No text annotation | ||
| IL_9KDV_161 | 1/S2/23:25, 1/S2/650:652 | No text annotation | ||
| IL_9KDV_162 | 1/S2/34:36, 1/S2/520:522 | No text annotation | ||
| IL_9KDV_163 | 1/S2/108:110, 1/S2/352:354 | No text annotation | ||
| IL_9KDV_164 | 1/S2/110:112, 1/S2/350:352 | No text annotation | ||
| IL_9KDV_165 | 1/S2/112:115, 1/S2/349:350 | No text annotation | ||
| IL_9KDV_166 | 1/S2/116:121, 1/S2/344:348 | No text annotation | ||
| IL_9KDV_167 | 1/S2/360:365, 1/S2/397:404 | No text annotation | ||
| IL_9KDV_168 | 1/S2/367:372, 1/S2/394:395 | No text annotation | ||
| IL_9KDV_169 | 1/S2/412:414, 1/S2/425:430 | No text annotation | ||
| IL_9KDV_170 | 1/S2/438:440, 1/S2/455:457 | No text annotation | ||
| IL_9KDV_171 | 1/S2/460:462, 1/S2/469:471 | No text annotation | ||
| IL_9KDV_175 | 1/S2/600:607, 1/S2/637:638 | No text annotation | ||
| IL_9KDV_176 | 1/S2/607:609, 1/S2/636:637 | No text annotation | ||
| IL_9KDV_177 | 1/S2/612:618, 1/S2/625:633 | No text annotation | ||
| IL_9KDV_178 | 1/S2/664:666, 1/S2/1163:1165 | No text annotation | ||
| IL_9KDV_179 | 1/S2/666:672, 1/S2/1162:1163 | No text annotation | ||
| IL_9KDV_180 | 1/S2/674:676, 1/S2/1031:1033 | No text annotation | ||
| IL_9KDV_181 | 1/S2/677:681, 1/S2/1026:1030 | No text annotation | ||
| IL_9KDV_182 | 1/S2/803:804, 1/S2/861:864 | No text annotation | ||
| IL_9KDV_183 | 1/S2/806:808, 1/S2/857:859 | No text annotation | ||
| IL_9KDV_184 | 1/S2/875:877, 1/S2/911:913 | No text annotation | ||
| IL_9KDV_185 | 1/S2/923:924, 1/S2/1020:1023 | No text annotation | ||
| IL_9KDV_186 | 1/S2/926:927, 1/S2/1016:1018 | No text annotation | ||
| IL_9KDV_187 | 1/S2/929:932, 1/S2/1011:1014 | No text annotation | ||
| IL_9KDV_188 | 1/S2/932:936, 1/S2/1008:1011 | No text annotation | ||
| IL_9KDV_189 | 1/S2/943:946, 1/S2/982:985 | No text annotation | ||
| IL_9KDV_190 | 1/S2/953:957, 1/S2/968:975 | No text annotation | ||
| IL_9KDV_191 | 1/S2/1043:1048, 1/S2/1072:1074 | No text annotation | ||
| IL_9KDV_192 | 1/S2/1048:1052, 1/S2/1068:1072 | No text annotation | ||
| IL_9KDV_193 | 1/S2/1092:1094, 1/S2/1153:1159 | No text annotation | ||
| IL_9KDV_194 | 1/S2/1099:1102, 1/S2/1132:1135 | No text annotation | ||
| IL_9KDV_195 | 1/S2/1102:1104, 1/S2/1130:1132 | No text annotation | ||
| IL_9KDV_196 | 1/S2/1109:1111, 1/S2/1124:1125 | No text annotation | ||
| IL_9KDV_197 | 1/S2/1169:1176, 1/S2/1187:1192 | No text annotation | ||
| IL_9KDV_198 | 1/S2/1204:1205, 1/S2/1695:1697 | No text annotation | ||
| IL_9KDV_199 | 1/S2/1207:1209, 1/S2/1692:1693 | No text annotation | ||
| IL_9KDV_200 | 1/S2/1215:1218, 1/S2/1682:1686 | No text annotation | ||
| IL_9KDV_201 | 1/S2/1231:1233, 1/S2/1527:1529 | No text annotation | ||
| IL_9KDV_202 | 1/S2/1236:1237, 1/S2/1522:1524 | No text annotation | ||
| IL_9KDV_205 | 1/S2/1326:1328, 1/S2/1503:1504 | No text annotation | ||
| IL_9KDV_206 | 1/S2/1330:1334, 1/S2/1499:1501 | No text annotation | ||
| IL_9KDV_207 | 1/S2/1330:1336, 1/S2/1493:1501 | No text annotation | ||
| IL_9KDV_208 | 1/S2/1334:1336, 1/S2/1493:1499 | No text annotation | ||
| IL_9KDV_209 | 1/S2/1338:1339, 1/S2/1489:1491 | No text annotation | ||
| IL_9KDV_210 | 1/S2/1348:1350, 1/S2/1381:1383 | No text annotation | ||
| IL_9KDV_211 | 1/S2/1364:1366, 1/S2/1375:1376 | No text annotation | ||
| IL_9KDV_212 | 1/S2/1396:1400, 1/S2/1448:1451 | No text annotation | ||
| IL_9KDV_213 | 1/S2/1402:1408, 1/S2/1439:1446 | No text annotation | ||
| IL_9KDV_214 | 1/S2/1413:1414, 1/S2/1428:1430 | No text annotation | ||
| IL_9KDV_215 | 1/S2/1538:1540, 1/S2/1595:1597 | No text annotation | ||
| IL_9KDV_216 | 1/S2/1542:1551, 1/S2/1583:1593 | No text annotation | ||
| IL_9KDV_217 | 1/S2/1551:1559, 1/S2/1578:1583 | No text annotation | ||
| IL_9KDV_218 | 1/S2/1605:1611, 1/S2/1630:1636 | No text annotation | ||
| IL_9KDV_219 | 1/S2/1701:1703, 1/S2/1834:1837 | No text annotation | ||
| IL_9KDV_220 | 1/S2/1703:1706, 1/S2/1830:1834 | No text annotation | ||
| IL_9KDV_221 | 1/S2/1707:1709, 1/S2/1827:1829 | No text annotation | ||
| IL_9KDV_222 | 1/S2/1709:1712, 1/S2/1823:1827 | No text annotation | ||
| IL_9KDV_223 | 1/S2/1715:1717, 1/S2/1818:1820 | No text annotation | ||
| IL_9KDV_224 | 1/S2/1718:1721, 1/S2/1814:1817 | No text annotation | ||
| IL_9KDV_225 | 1/S2/1721:1723, 1/S2/1813:1814 | No text annotation | ||
| IL_9KDV_226 | 1/S2/1730:1732, 1/S2/1804:1806 | No text annotation | ||
| IL_9KDV_227 | 1/S2/1734:1737, 1/S2/1799:1802 | No text annotation | ||
| IL_9KDV_228 | 1/S2/1740:1742, 1/S2/1794:1796 | No text annotation | ||
| IL_9KDV_229 | 1/S2/1743:1749, 1/S2/1787:1793 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9KDV_009 | No text annotation | ||
| IL_9KDV_010 | No text annotation | ||
| IL_9KDV_023 | No text annotation | ||
| IL_9KDV_024 | No text annotation | ||
| IL_9KDV_036 | No text annotation | ||
| IL_9KDV_037 | No text annotation | ||
| IL_9KDV_063 | No text annotation | ||
| IL_9KDV_089 | No text annotation | ||
| IL_9KDV_098 | No text annotation | ||
| IL_9KDV_138 | No text annotation | ||
| IL_9KDV_145 | No text annotation | ||
| IL_9KDV_172 | No text annotation | ||
| IL_9KDV_173 | No text annotation | ||
| IL_9KDV_174 | No text annotation | ||
| IL_9KDV_203 | No text annotation | ||
| IL_9KDV_204 | No text annotation | ||
| IL_9KDV_230 | Single base bend | ||
| IL_9KDV_231 | No text annotation | ||
| IL_9KDV_232 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9KDV_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/274:277 | No text annotation | ||
| J3_9KDV_002 | 1/L5/350:366, 1/L5/373:378, 1/L8/21:24 | No text annotation | ||
| J3_9KDV_003 | 1/L5/379:386, 1/L5/413:414, 1/L8/19:20 | No text annotation | ||
| J3_9KDV_004 | 1/L5/379:389, 1/L5/400:414, 1/L8/19:20 | No text annotation | ||
| J3_9KDV_005 | 1/L5/450:454, 1/L5/709:713, 1/L5/1107:1111 | No text annotation | ||
| J3_9KDV_006 | 1/L5/1345:1351, 1/L5/1436:1438, 1/L5/1454:1457 | No text annotation | ||
| J3_9KDV_007 | 1/L5/1360:1362, 1/L5/1394:1398, 1/L5/1423:1426 | No text annotation | ||
| J3_9KDV_008 | 1/L5/1529:1530, 1/L5/1605:1609, 1/L5/1635:1640 | No text annotation | ||
| J3_9KDV_009 | 1/L5/2150:2156, 1/L5/2559:2561, 1/L5/2573:2576 | No text annotation | ||
| J3_9KDV_010 | 1/L5/2159:2162, 1/L5/2539:2545, 1/L5/2554:2556 | No text annotation | ||
| J3_9KDV_011 | 1/L5/2197:2202, 1/L5/2272:2276, 1/L5/2293:2294 | No text annotation | ||
| J3_9KDV_012 | 1/L5/2208:2213, 1/L5/2222:2233, 1/L5/2258:2265 | No text annotation | ||
| J3_9KDV_013 | 1/L5/2308:2312, 1/L5/2326:2329, 1/L5/2511:2521 | No text annotation | ||
| J3_9KDV_014 | 1/L5/2329:2330, 1/L5/2339:2343, 1/L5/2510:2511 | No text annotation | ||
| J3_9KDV_015 | 1/L5/2352:2356, 1/L5/2491:2492, 1/L5/2496:2501 | No text annotation | ||
| J3_9KDV_016 | 1/L5/3594:3596, 1/L5/3725:3729, 1/L5/3821:3826 | No text annotation | ||
| J3_9KDV_017 | 1/L5/3881:3883, 1/L5/3984:3995, 1/L5/4023:4028 | No text annotation | ||
| J3_9KDV_018 | 1/L5/3894:3896, 1/L5/3920:3922, 1/L5/3931:3936 | No text annotation | ||
| J3_9KDV_019 | 1/L5/4116:4119, 1/L5/4144:4146, 1/L5/4160:4166 | No text annotation | ||
| J3_9KDV_020 | 1/L5/4405:4408, 1/L5/4525:4529, 1/L5/4582:4596 | No text annotation | ||
| J3_9KDV_021 | 1/L5/4618:4620, 1/L5/4634:4639, 1/L5/4708:4711 | No text annotation | ||
| J3_9KDV_022 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | geometric J3_8QYX_024 J3_26985.3 | |
| J3_9KDV_023 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | ||
| J3_9KDV_024 | 1/S2/683:686, 1/S2/918:923, 1/S2/1023:1024 | No text annotation | ||
| J3_9KDV_025 | 1/S2/683:686, 1/S2/918:924, 1/S2/1020:1024 | No text annotation | ||
| J3_9KDV_026 | 1/S2/808:821, 1/S2/829:832, 1/S2/844:857 | No text annotation | ||
| J3_9KDV_027 | 1/S2/939:942, 1/S2/986:994, 1/S2/1001:1005 | No text annotation | ||
| J3_9KDV_028 | 1/S2/1095:1097, 1/S2/1137:1141, 1/S2/1148:1152 | No text annotation | ||
| J3_9KDV_029 | 1/S2/1219:1222, 1/S2/1646:1652, 1/S2/1674:1681 | No text annotation | ||
| J3_9KDV_030 | 1/S2/1226:1229, 1/S2/1531:1533, 1/S2/1639:1642 | No text annotation | ||
| J3_9KDV_031 | 1/S2/1238:1245, 1/S2/1256:1267, 1/S2/1517:1521 | No text annotation | ||
| J3_9KDV_032 | 1/S2/1271:1279, 1/S2/1320:1325, 1/S2/1505:1513 | No text annotation | ||
| J3_9KDV_033 | 1/S2/1341:1346, 1/S2/1385:1390, 1/S2/1482:1487 | No text annotation | ||
| J3_9KDV_034 | 1/S2/1351:1352, 1/S2/1361:1364, 1/S2/1376:1380 | No text annotation | ||
| J3_9KDV_035 | 1/S2/1392:1396, 1/S2/1451:1457, 1/S2/1471:1480 | No text annotation | ||
| J3_9KDV_036 | 1/S2/1533:1537, 1/S2/1598:1605, 1/S2/1636:1639 | No text annotation | ||
| J4_9KDV_001 | 1/L5/111:112, 1/L5/277:282, 1/L5/303:309, 1/L5/326:329 | No text annotation | ||
| J4_9KDV_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_9KDV_003 | 1/L5/2122:2128, 1/L5/2146:2148, 1/L5/2578:2583, 1/L5/3513:3514 | No text annotation | ||
| J4_9KDV_004 | 1/L5/2163:2167, 1/L5/2191:2196, 1/L5/2295:2296, 1/L5/2531:2538 | No text annotation | ||
| J4_9KDV_005 | 1/L5/2208:2213, 1/L5/2222:2226, 1/L5/2228:2233, 1/L5/2258:2265 | No text annotation | ||
| J4_9KDV_006 | 1/L5/2372:2373, 1/L5/2391:2396, 1/L5/2446:2452, 1/L5/2472:2473 | No text annotation | ||
| J4_9KDV_007 | 1/L5/3291:3295, 1/L5/3307:3311, 1/L5/3347:3351, 1/L5/3478:3483 | No text annotation | ||
| J4_9KDV_008 | 1/L5/3353:3355, 1/L5/3409:3410, 1/L5/3428:3437, 1/L5/3471:3476 | No text annotation | ||
| J4_9KDV_009 | 1/L5/3884:3888, 1/L5/3942:3944, 1/L5/3971:3972, 1/L5/3981:3983 | No text annotation | ||
| J4_9KDV_010 | 1/L5/4240:4243, 1/L5/4273:4274, 1/L5/4329:4331, 1/L5/4365:4368 | No text annotation | ||
| J4_9KDV_011 | 1/S2/672:674, 1/S2/1033:1038, 1/S2/1079:1090, 1/S2/1161:1162 | No text annotation | ||
| J4_9KDV_012 | 1/S6/8:11, 1/S6/25:27, 1/S6/43:49, 1/S6/65:66 | tRNA junction | homologous J4_8VU0_001 J4_95067.2 | |
| J5_9KDV_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | ||
| J5_9KDV_002 | 1/L5/1150:1155, 1/L5/1330:1333, 1/L5/1472:1475, 1/L5/2045:2047, 1/L5/2102:2108 | No text annotation | ||
| J5_9KDV_003 | 1/L5/2609:2617, 1/L5/2641:2642, 1/L5/3270:3271, 1/L5/3275:3283, 1/L5/3492:3494 | No text annotation | ||
| J5_9KDV_004 | 1/L5/3560:3567, 1/L5/4045:4053, 1/L5/4097:4106, 1/L5/4181:4187, 1/L5/4205:4210 | No text annotation | ||
| J5_9KDV_005 | 1/L5/3577:3580, 1/L5/3841:3844, 1/L5/3857:3858, 1/L5/3880:3881, 1/L5/4028:4034 | No text annotation | ||
| J5_9KDV_006 | 1/S2/30:34, 1/S2/522:529, 1/S2/558:570, 1/S2/582:597, 1/S2/641:645 | No text annotation | ||
| J6_9KDV_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/331:338, 1/L8/33:35 | No text annotation | ||
| J6_9KDV_002 | 1/L5/1167:1170, 1/L5/1199:1203, 1/L5/1210:1214, 1/L5/1232:1235, 1/L5/1278:1280, 1/L5/1313:1318 | No text annotation | ||
| J6_9KDV_003 | 1/L5/3577:3580, 1/L5/3841:3844, 1/L5/3857:3858, 1/L5/3880:3883, 1/L5/3984:3995, 1/L5/4023:4034 | No text annotation | ||
| J7_9KDV_001 | 1/L5/1480:1485, 1/L5/1498:1499, 1/L5/1655:1658, 1/L5/1682:1687, 1/L5/1698:1702, 1/L5/1880:1881, 1/L5/2035:2040 | No text annotation | ||
| J7_9KDV_002 | 1/S2/37:106, 1/S2/356:358, 1/S2/406:410, 1/S2/432:437, 1/S2/458:460, 1/S2/471:498, 1/S2/506:519 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_9KDV_013 | tRNA junction |
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