HL_9KDV_016

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCCGCCCGGGG

Length

11 nucleotides

Bulged bases

9KDV|1|L5|C|1222, 9KDV|1|L5|C|1223, 9KDV|1|L5|C|1224, 9KDV|1|L5|G|1225

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|C|1218
9KDV|1|L5|C|1219
9KDV|1|L5|C|1220
9KDV|1|L5|G|1221
9KDV|1|L5|C|1222
9KDV|1|L5|C|1223
9KDV|1|L5|C|1224
9KDV|1|L5|G|1225
9KDV|1|L5|G|1226
9KDV|1|L5|G|1227
9KDV|1|L5|G|1228

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain Lb

Large ribosomal subunit protein eL29