HL_9KDV_044

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9KDV|1|L5|A|3417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|G|3414
9KDV|1|L5|U|3415
9KDV|1|L5|A|3416
9KDV|1|L5|A|3417
9KDV|1|L5|C|3418
9KDV|1|L5|U|3419
9KDV|1|L5|A|3420
9KDV|1|L5|U|3421
9KDV|1|L5|G|3422
9KDV|1|L5|A|3423
9KDV|1|L5|C|3424

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain S7

Transfer RNA; tRNA