HL_9KDV_047

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9KDV|1|L5|G|3848

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|L5|C|3846
9KDV|1|L5|U|3847
9KDV|1|L5|G|3848
9KDV|1|L5|G|3849
9KDV|1|L5|G|3850
9KDV|1|L5|G|3851
9KDV|1|L5|C|3852
9KDV|1|L5|G|3853
9KDV|1|L5|G|3854

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16-like

Chain Lb

Large ribosomal subunit protein eL29

Chain S7

Transfer RNA; tRNA