HL_9KDV_072

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

9KDV|1|S2|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|G|378
9KDV|1|S2|U|379
9KDV|1|S2|C|380
9KDV|1|S2|G|381
9KDV|1|S2|C|382
9KDV|1|S2|C|383
9KDV|1|S2|G|384
9KDV|1|S2|U|385
9KDV|1|S2|G|386
9KDV|1|S2|C|387
9KDV|1|S2|C|388

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SI

Small ribosomal subunit protein eS8

Chain SL

Small ribosomal subunit protein uS17