HL_9KDV_077

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGACUCUUUCGAGGCC

Length

16 nucleotides

Bulged bases

9KDV|1|S2|A|537, 9KDV|1|S2|U|542, 9KDV|1|S2|G|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|G|535
9KDV|1|S2|G|536
9KDV|1|S2|A|537
9KDV|1|S2|C|538
9KDV|1|S2|U|539
9KDV|1|S2|C|540
9KDV|1|S2|U|541
9KDV|1|S2|U|542
9KDV|1|S2|U|543
9KDV|1|S2|C|544
9KDV|1|S2|G|545
9KDV|1|S2|A|546
9KDV|1|S2|G|547
9KDV|1|S2|G|548
9KDV|1|S2|C|549
9KDV|1|S2|C|550

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain Se

Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein