HL_9KDV_078

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|A|570
9KDV|1|S2|C|571
9KDV|1|S2|U|572
9KDV|1|S2|U|573
9KDV|1|S2|U|574
9KDV|1|S2|A|575
9KDV|1|S2|A|576
9KDV|1|S2|A|577
9KDV|1|S2|U|578
9KDV|1|S2|C|579
9KDV|1|S2|C|580
9KDV|1|S2|U|581
9KDV|1|S2|U|582

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS4

Chain SY

Small ribosomal subunit protein eS24