HL_9KDV_081

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GGCCCGAGCCGCC

Length

13 nucleotides

Bulged bases

9KDV|1|S2|G|837, 9KDV|1|S2|G|839

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|G|832
9KDV|1|S2|G|833
9KDV|1|S2|C|834
9KDV|1|S2|C|835
9KDV|1|S2|C|836
9KDV|1|S2|G|837
9KDV|1|S2|A|838
9KDV|1|S2|G|839
9KDV|1|S2|C|840
9KDV|1|S2|C|841
9KDV|1|S2|G|842
9KDV|1|S2|C|843
9KDV|1|S2|C|844

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4

Chain SY

Small ribosomal subunit protein eS24