HL_9KDV_082
3D structure
- PDB id
- 9KDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CGCGGUUCUAUUUUGUUGGUUUUCGGAACUGAG
- Length
- 33 nucleotides
- Bulged bases
- 9KDV|1|S2|U|891, 9KDV|1|S2|G|892, 9KDV|1|S2|U|899, 9KDV|1|S2|U|900
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9KDV|1|S2|C|878
9KDV|1|S2|G|879
9KDV|1|S2|C|880
9KDV|1|S2|G|881
9KDV|1|S2|G|882
9KDV|1|S2|U|883
9KDV|1|S2|U|884
9KDV|1|S2|C|885
9KDV|1|S2|U|886
9KDV|1|S2|A|887
9KDV|1|S2|U|888
9KDV|1|S2|U|889
9KDV|1|S2|U|890
9KDV|1|S2|U|891
9KDV|1|S2|G|892
9KDV|1|S2|U|893
9KDV|1|S2|U|894
9KDV|1|S2|G|895
9KDV|1|S2|G|896
9KDV|1|S2|U|897
9KDV|1|S2|U|898
9KDV|1|S2|U|899
9KDV|1|S2|U|900
9KDV|1|S2|C|901
9KDV|1|S2|G|902
9KDV|1|S2|G|903
9KDV|1|S2|A|904
9KDV|1|S2|A|905
9KDV|1|S2|C|906
9KDV|1|S2|U|907
9KDV|1|S2|G|908
9KDV|1|S2|A|909
9KDV|1|S2|G|910
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain LR
- Large ribosomal subunit protein eL19
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- Small ribosomal subunit protein uS17
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