HL_9KDV_085

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

9KDV|1|S2|U|1062

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|G|1055
9KDV|1|S2|A|1056
9KDV|1|S2|U|1057
9KDV|1|S2|C|1058
9KDV|1|S2|A|1059
9KDV|1|S2|G|1060
9KDV|1|S2|A|1061
9KDV|1|S2|U|1062
9KDV|1|S2|A|1063
9KDV|1|S2|C|1064
9KDV|1|S2|C|1065

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain S6

Transfer RNA; tRNA

Chain SO

Small ribosomal subunit protein uS11

Chain Sx

RNA (5'-R(P*AP*UP*CP*AP*UP*GP*AP*AP*GP*U)-3')