HL_9KDV_086

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

AUUCCCAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|A|1114
9KDV|1|S2|U|1115
9KDV|1|S2|U|1116
9KDV|1|S2|C|1117
9KDV|1|S2|C|1118
9KDV|1|S2|C|1119
9KDV|1|S2|A|1120
9KDV|1|S2|U|1121

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SB

Small ribosomal subunit protein eS1

Chain Sb

Small ribosomal subunit protein eS27