HL_9KDV_093

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9KDV|1|S2|G|1423, 9KDV|1|S2|C|1424

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9KDV|1|S2|C|1417
9KDV|1|S2|C|1418
9KDV|1|S2|C|1419
9KDV|1|S2|C|1420
9KDV|1|S2|G|1421
9KDV|1|S2|A|1422
9KDV|1|S2|G|1423
9KDV|1|S2|C|1424
9KDV|1|S2|G|1425

Current chains

Chain S2

Mus musculus 18S ribosomal RNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain ST

Small ribosomal subunit protein eS19