HL_9KDV_099

3D structure

PDB id

9KDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

9KDV|1|S6|C|17, 9KDV|1|S6|G|18, 9KDV|1|S6|G|19, 9KDV|1|S6|A|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KDV_099 not in the Motif Atlas

Homologous match to HL_7EQJ_004

Geometric discrepancy: 0.1584

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9KDV|1|S6|C|14
9KDV|1|S6|A|15
9KDV|1|S6|G|16
9KDV|1|S6|C|17
9KDV|1|S6|G|18
9KDV|1|S6|G|19
9KDV|1|S6|A|20
9KDV|1|S6|A|21
9KDV|1|S6|G|22

Current chains

Chain S6

A*, P/E tRNA

Nearby chains