HL_9KDW_099
3D structure
- PDB id
- 9KDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KDW_099 not in the Motif Atlas
- Homologous match to HL_9MTS_102
- Geometric discrepancy: 0.1165
- The information below is about HL_9MTS_102
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9KDW|1|S6|G|31
9KDW|1|S6|C|32
9KDW|1|S6|C|33
9KDW|1|S6|C|34
9KDW|1|S6|A|35
9KDW|1|S6|U|36
9KDW|1|S6|A|37
9KDW|1|S6|A|38
9KDW|1|S6|C|39
Current chains
- Chain S6
- A/P, P/E tRNA
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain Sx
- RNA (5'-R(P*AP*UP*CP*AP*UP*GP*AP*AP*GP*U)-3')
Coloring options: