HL_9KKF_018
3D structure
- PDB id
- 9KKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 40S ribosome complexed with HCV IRES and eIF3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9KKF_018 not in the Motif Atlas
- Homologous match to HL_9PN5_095
- Geometric discrepancy: 0.1649
- The information below is about HL_9PN5_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9KKF|1|S2|A|957
9KKF|1|S2|G|958
9KKF|1|S2|G|959
9KKF|1|S2|U|960
9KKF|1|S2|G|961
9KKF|1|S2|A|962
9KKF|1|S2|A|963
9KKF|1|S2|A|964
9KKF|1|S2|U|965
9KKF|1|S2|U|966
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SO
- 40S ribosomal protein S14
- Chain zz
- Internal ribosome entry site; IRES
Coloring options: