HL_9KMU_005

3D structure

PDB id

9KMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bat SARSr-CoV RaTG15 Nsp1 bound to the Human 40S Ribosomal subunit-State2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9KMU|1|2|U|294

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9KMU_005 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2473

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9KMU|1|2|G|288
9KMU|1|2|G|289
9KMU|1|2|U|290
9KMU|1|2|G|291
9KMU|1|2|A|292
9KMU|1|2|C|293
9KMU|1|2|U|294
9KMU|1|2|C|295

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain G

Small ribosomal subunit protein eS6

Chain L

Small ribosomal subunit protein uS17